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Showing posts with label HERC2. Show all posts
Showing posts with label HERC2. Show all posts

Tuesday, July 2, 2013

The color of the eyes: at least 17 HERC2 variants in Human gene pool

Today, after analyzing the Kurdish gene pool for HERC2 and the Eurasian gene pool for HERC2 I want to add the third post in the HERC2 trilogy. I analyzed additional data from other parts of the world and discovered 10 more existing Human haplotypes and one extinct haplotype in Neanderthals.

All the HERC2 haplotypes of humans, Neanderthals, Denisova and many mammals can be found in the spreadsheet I generated.

Interestingly, the ancestral HERC2 haplotype is ht13, which is present in the Denisova genome and most likely in the Neanderthal gene pool. Ht13 survived at low frequencies in Kumyk from the Caucasus (4%), Chenchus from India (25%), Mongolia (5-6%),  Bantu (3%), Mbuti Pygmies (15%), Sandawe (11%), Puerto Rican (2%) and Dominican (2%).

Below is a rectangular tree of these haplotypes (ht1 and h2 give light eye colors):



The highest variability of HERC2 can be found in Subsaharan Africa and in mixed population of the New World (African American, Dominican, Colombian, Puerto Rican).




 N total N with ht3-18 data #1 #2 #3 #4 #5 #6 #7 #8 #9 #10 #11 #12 #13 #14 #15 #16 #17 #18 ND
Europe 1171 305 31% 21% 15% 3% 11% 9% 1% 0% 0% 1% 0% 0% 0% 1% 0% 0% 0% 0% 1%
West Asia 628 527 20% 4% 20% 8% 13% 20% 7% 0% 0% 1% 0% 0% 0% 1% 0% 0% 0% 0% 5%
South Asia 405 298 7% 3% 25% 6% 20% 21% 11% 0% 0% 4% 0% 1% 0% 1% 0% 0% 0% 0% 2%
Southeast Asia 172 151 1% 0% 29% 10% 21% 28% 11% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Northeast Asia 197 197 2% 2% 29% 1% 37% 26% 2% 0% 0% 1% 0% 0% 1% 0% 0% 0% 0% 0% 1%
Central Asia 66 66 5% 6% 18% 7% 32% 23% 2% 0% 0% 2% 0% 0% 0% 1% 1% 0% 0% 0% 5%
Northern Africa 211 77 5% 0% 24% 17% 6% 19% 10% 6% 0% 1% 1% 0% 0% 1% 0% 0% 0% 0% 1%
Subsaharan Africa 141 141 0% 1% 5% 8% 4% 13% 11% 19% 5% 7% 7% 1% 4% 0% 0% 1% 1% 0% 12%
America 285 186 6% 3% 23% 6% 22% 6% 3% 7% 1% 4% 1% 0% 1% 2% 1% 0% 0% 0% 11%
Denisova 1 1 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 100% 0% 0% 0% 0% 0% 0%
Neanderthal* 1 1 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 50% 0% 0% 0% 0% 50% 0%





N #1 #2 #3 #4 #5 #6 #7 #8 #9 #10 #11 #12 #13 #14 #15 #16 #17 #18 ND
Lithuanians 10 35% 60% 0% 0% 0% 5% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Belorussians 7 36% 64% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Erzya 9 39% 56% 0% 0% 6% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Kargopol_Russian 25 36% 46% 8% 2% 4% 4% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Russians 5 60% 20% 0% 0% 10% 10% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Ukrainian 20 43% 38% 8% 0% 8% 5% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Moksha 5 30% 50% 10% 0% 0% 10% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Hungarians 18 17% 50% 14% 0% 14% 6% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Chuvash 16 28% 31% 19% 0% 13% 6% 3% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Dolgans 6 0% 0% 25% 0% 50% 25% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Bulgarian 13 31% 12% 12% 0% 0% 4% 0% 0% 0% 19% 0% 0% 0% 8% 0% 0% 0% 0% 15%
Romanians 14 29% 25% 21% 4% 14% 7% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Orcadian 11 27% 41% 5% 5% 18% 5% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Orcadian 19 42% 21% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 37%
Argyll_Scottish 3 17% 17% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 67%
Cornish 30 33% 17% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 50%
Kent 36 26% 7% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 67%
Utah_USA 89 31% 20% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 49%
Finnish 96 37% 21% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 42%
Swedes 36 42% 54% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 4%
Danes 19 52% 32% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 16%
Germans 91 46% 33% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 21%
Austrian 49 55% 28% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 17%
Swiss 16 69% 25% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 6%
French 27 31% 30% 19% 4% 6% 11% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
North_Italian 13 42% 27% 8% 4% 8% 8% 4% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Tuscan 80 8% 3% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 89%
Tuscan 8 25% 19% 6% 0% 19% 31% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
French_Basque 24 19% 21% 17% 6% 23% 8% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Spanish_Pais_Vasco 8 19% 6% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 75%
Spanish_Andalucia 4 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Spanish_Aragon 5 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Spanish_Baleares 8 6% 6% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 88%
Spanish_Canarias 2 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Spanish_Cantabria 6 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Spanish_Castilla_La_Mancha 4 13% 13% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 75%
Spanish_Castilla_Y_Leon 12 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Spanish_Cataluna 5 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Spanish_Extremadura 8 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Spanish_Galicia 8 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Galician 215 30% 17% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 53%
Spanish_Murcia 6 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Spanish_Valencia 10 10% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 90%
Spanish 11 36% 5% 32% 9% 9% 5% 0% 0% 0% 0% 0% 0% 0% 5% 0% 0% 0% 0% 0%
Spanish 1 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Sardinian 24 19% 4% 40% 6% 10% 19% 0% 0% 0% 0% 0% 0% 0% 2% 0% 0% 0% 0% 0%
Ashkenazy_Jews 21 38% 14% 12% 2% 12% 7% 2% 0% 0% 2% 0% 0% 0% 10% 0% 0% 0% 0% 0%
Sephardic_Jews 18 25% 11% 25% 3% 11% 14% 11% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Cypriots 12 33% 0% 21% 13% 17% 13% 4% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Lezgins 16 19% 3% 22% 6% 22% 25% 3% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Nogay 14 39% 0% 21% 4% 21% 11% 4% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
North_Ossetian 13 31% 15% 35% 8% 4% 8% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Kumyk 13 38% 12% 15% 0% 19% 12% 0% 0% 0% 0% 0% 0% 4% 0% 0% 0% 0% 0% 0%
Balkar 16 38% 6% 13% 9% 22% 9% 3% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Abhkasian 18 17% 6% 22% 14% 17% 22% 3% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Adygei 17 26% 6% 12% 3% 18% 26% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Chechen 18 31% 11% 14% 3% 19% 22% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Georgians 14 46% 0% 7% 4% 18% 21% 4% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Iranians 16 3% 6% 28% 3% 13% 28% 13% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 6%
Hazara 17 6% 0% 26% 3% 29% 26% 3% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 6%
Balochi 50 10% 4% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 86%
Balochi 15 10% 3% 10% 17% 23% 23% 7% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 7%
Kurd 26 19% 4% 19% 15% 21% 17% 4% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Turks 19 21% 8% 29% 8% 13% 16% 5% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Iranian_Jews 4 13% 0% 13% 0% 0% 63% 13% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Iraqi_Jews 9 17% 0% 28% 17% 11% 28% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Lebanese 4 13% 0% 38% 38% 0% 13% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Lebanese_Muslim 25 14% 8% 14% 12% 12% 32% 8% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Armenian 27 24% 2% 19% 9% 2% 9% 4% 0% 0% 6% 0% 0% 0% 0% 0% 0% 0% 0% 26%
Lebanese_Christian 24 33% 6% 15% 10% 6% 19% 6% 0% 2% 0% 0% 0% 0% 2% 0% 0% 0% 0% 0%
Lebanese_Druze 24 17% 2% 31% 10% 13% 13% 13% 2% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Druze 20 25% 0% 8% 3% 8% 18% 3% 0% 0% 13% 0% 3% 0% 3% 0% 0% 0% 0% 20%
Syrians 15 33% 0% 13% 3% 23% 20% 3% 0% 0% 3% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Palestinian 51 18% 3% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND -21%
Palestinian 31 24% 2% 13% 6% 8% 26% 15% 2% 0% 0% 0% 0% 0% 2% 0% 0% 0% 0% 3%
Jordanians 19 13% 8% 29% 5% 13% 21% 11% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Saudis 19 5% 0% 26% 0% 8% 13% 26% 3% 0% 0% 3% 0% 0% 0% 0% 0% 0% 0% 16%
Yemenese 7 7% 0% 14% 7% 7% 14% 21% 14% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 14%
Yemenite_Jews 15 7% 0% 30% 3% 0% 30% 10% 0% 0% 0% 0% 0% 0% 7% 0% 0% 0% 0% 13%
Bedouin 40 11% 0% 20% 15% 1% 20% 16% 0% 0% 4% 0% 1% 0% 1% 0% 0% 0% 0% 10%
Brahui 20 3% 0% 23% 10% 25% 13% 5% 0% 0% 10% 0% 0% 0% 8% 0% 0% 0% 0% 5%
Brahui 25 2% 2% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Burusho 25 18% 12% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND -30%
Burusho 25 14% 10% 18% 0% 16% 14% 4% 0% 0% 8% 0% 2% 0% 2% 0% 0% 0% 0% 12%
Kalash 25 12% 16% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Brahmins_TN&UP 9 6% 0% 17% 11% 6% 28% 11% 0% 0% 11% 0% 11% 0% 0% 0% 0% 0% 0% 0%
Chamar 9 6% 0% 33% 11% 11% 11% 17% 0% 0% 11% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Hakkipikki 4 0% 0% 25% 0% 13% 38% 13% 0% 0% 0% 0% 13% 0% 0% 0% 0% 0% 0% 0%
Chenchus 4 0% 0% 38% 0% 13% 0% 0% 0% 0% 13% 0% 13% 25% 0% 0% 0% 0% 0% 0%
Gond 2 0% 0% 50% 0% 0% 25% 0% 0% 0% 25% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Dharkars 9 0% 0% 22% 11% 28% 17% 17% 0% 0% 6% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Dusadh 6 0% 0% 33% 0% 25% 8% 8% 0% 0% 8% 0% 0% 0% 0% 0% 0% 0% 0% 17%
Makrani 20 10% 3% 18% 8% 33% 23% 5% 0% 0% 3% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Pathan 21 19% 2% 14% 7% 24% 17% 17% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Lambadi 1 0% 0% 50% 0% 0% 50% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Meena 1 0% 0% 50% 0% 50% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Nihali 1 0% 0% 0% 0% 50% 50% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Tharus 2 25% 0% 25% 0% 0% 25% 25% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Uttar_Pradesh 5 0% 0% 60% 0% 20% 20% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Gujarati 32 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Sindhi 14 4% 0% 29% 7% 14% 32% 11% 0% 0% 0% 0% 0% 0% 4% 0% 0% 0% 0% 0%
Bengali 1 50% 0% 50% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Kurmi 1 0% 0% 0% 0% 0% 0% 100% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Kurumba 3 33% 0% 17% 0% 33% 0% 17% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
North_Kannadi 4 25% 0% 25% 38% 0% 13% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Muslim_India 5 10% 0% 20% 40% 0% 20% 10% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Meghawal 1 0% 0% 0% 50% 50% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Kol 14 0% 0% 36% 4% 21% 25% 14% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Kanjars 7 0% 0% 14% 0% 14% 64% 7% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Cochin_Jews 3 0% 0% 17% 0% 17% 33% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 33%
Mumbai_Jews 4 13% 0% 25% 0% 0% 0% 38% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 25%
Kshatriya 7 0% 0% 29% 0% 29% 43% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Velamas 7 7% 0% 21% 0% 43% 0% 29% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Pulliyar 1 0% 0% 0% 0% 100% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Tamil_Nadu 1 0% 0% 50% 0% 50% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Piramalai 8 0% 0% 31% 6% 25% 19% 19% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Singapore_Indian 78 8% 2% 27% 4% 18% 26% 12% 0% 0% 3% 0% 0% 0% 1% 0% 0% 0% 0% 0%
Austroasiatic 11 5% 0% 32% 5% 5% 36% 18% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Tibeto-Burman_Burmese 14 0% 0% 32% 18% 18% 21% 11% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Tibeto-Burman_Garo 2 0% 0% 25% 0% 50% 25% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Cambodian 10 0% 0% 25% 10% 30% 25% 5% 0% 0% 0% 0% 0% 0% 5% 0% 0% 0% 0% 0%
Vietnamese 21 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Malay 87 1% 0% 22% 13% 28% 30% 6% 1% 0% 0% 0% 1% 0% 0% 0% 0% 0% 0% 0%
NAN_Melanesian 10 0% 0% 20% 0% 0% 15% 65% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Papuan 17 0% 0% 68% 0% 0% 26% 6% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Miaozu 10 0% 0% 25% 0% 25% 50% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Oroqen 9 0% 0% 17% 0% 61% 22% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
She 9 0% 0% 33% 0% 11% 56% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Daur 9 0% 0% 17% 0% 56% 28% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Mongola 10 0% 0% 35% 5% 25% 30% 0% 0% 0% 0% 0% 0% 5% 0% 0% 0% 0% 0% 0%
Mongolians 9 0% 0% 28% 0% 50% 11% 6% 0% 0% 0% 0% 0% 6% 0% 0% 0% 0% 0% 0%
Tuvinians 13 0% 0% 42% 0% 35% 23% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Nganassans 9 0% 0% 28% 0% 56% 11% 6% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Koryaks 10 0% 0% 40% 0% 50% 0% 10% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Chukchis 11 0% 0% 41% 0% 45% 9% 5% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Dai 10 0% 0% 35% 0% 10% 55% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Evenkis 11 0% 0% 32% 0% 45% 23% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Yakut 20 0% 0% 40% 0% 43% 18% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Hezhen 7 0% 0% 43% 0% 36% 21% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Xibo 9 0% 0% 11% 0% 44% 39% 0% 0% 0% 6% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Tu 8 0% 0% 13% 0% 31% 50% 0% 0% 0% 6% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Tujia 10 0% 0% 5% 5% 45% 35% 10% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Yizu 10 0% 0% 35% 0% 15% 40% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 10%
Yukaghirs 4 0% 13% 38% 0% 38% 13% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Selkups 9 39% 44% 11% 0% 6% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Altaians 12 0% 4% 17% 0% 17% 21% 0% 0% 0% 8% 0% 0% 0% 4% 4% 0% 0% 0% 25%
Tadjik 14 7% 11% 18% 7% 36% 18% 4% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Uzbeks 15 3% 13% 27% 23% 13% 20% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Uygur 10 10% 0% 20% 0% 35% 35% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Buryats 15 7% 0% 10% 0% 57% 23% 3% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Egyptians 11 23% 0% 18% 18% 14% 18% 9% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Moroccan_Jews 12 33% 8% 17% 8% 8% 25% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Moroccans 7 0% 0% 29% 7% 7% 21% 29% 7% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Mozabite_Berber 18 6% 0% 44% 25% 0% 14% 6% 0% 0% 0% 3% 0% 0% 3% 0% 0% 0% 0% 0%
Ethiopian_Jews 10 5% 0% 15% 20% 0% 15% 15% 15% 0% 5% 0% 0% 0% 0% 0% 0% 0% 0% 10%
Ethiopians 19 8% 0% 16% 16% 11% 24% 11% 16% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Ethiopian_Afar 3 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Ethiopian_Amhara 18 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Ethiopian_Anuak 18 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Ethiopian_Ari_blacksmith 6 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Ethiopian_Ari_cultivator 15 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Ethiopian_Gumuz 6 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Ethiopian_Oromo 17 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Ethiopian_Tigray 17 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Ethiopian_Wolayta 3 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Somali 14 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Sudanese 17 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Hadza 11 0% 0% 0% 0% 5% 0% 45% 9% 5% 32% 5% 0% 0% 0% 0% 0% 0% 0% 0%
Bantu 18 0% 0% 0% 0% 0% 0% 11% 28% 3% 3% 19% 0% 3% 0% 0% 0% 6% 0% 28%
Mandenka 18 0% 0% 8% 3% 19% 0% 11% 25% 3% 3% 11% 0% 0% 0% 0% 6% 0% 0% 11%
Mbuti_Pygmies 13 0% 0% 0% 0% 0% 15% 12% 31% 0% 4% 15% 0% 15% 0% 0% 0% 0% 0% 8%
Biaka_Pygmies 22 0% 0% 0% 14% 0% 9% 2% 36% 14% 2% 0% 7% 0% 2% 0% 0% 0% 0% 14%
San 31 2% 3% 10% 5% 3% 34% 2% 5% 0% 13% 6% 0% 0% 0% 0% 2% 0% 0% 16%
Sandawe 28 0% 0% 9% 23% 2% 14% 13% 11% 11% 4% 0% 0% 11% 0% 0% 0% 0% 0% 4%
African_American 33 2% 5% 5% 17% 3% 0% 9% 26% 6% 3% 2% 0% 0% 2% 2% 0% 0% 0% 21%
Peruvian 53 0% 0% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 100%
Colombian 30 8% 5% 13% 5% 17% 10% 3% 0% 0% 12% 0% 0% 0% 5% 3% 0% 2% 0% 17%
Ecuadorian 16 9% 3% 22% 6% 34% 6% 3% 0% 0% 3% 0% 0% 0% 0% 0% 0% 0% 0% 13%
Puerto_Rican 26 10% 6% 35% 6% 10% 8% 6% 8% 0% 0% 2% 0% 2% 0% 0% 2% 0% 0% 8%
Dominican 25 4% 4% 28% 4% 10% 12% 0% 8% 2% 6% 6% 0% 2% 2% 0% 0% 0% 0% 12%
Mexican 46 8% 1% ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND ND 91%
West_Greenlanders 10 20% 15% 25% 0% 30% 5% 5% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
East_Greenlanders 7 14% 7% 21% 0% 14% 14% 0% 0% 0% 14% 0% 7% 0% 7% 0% 0% 0% 0% 0%
Pima 10 0% 0% 25% 0% 75% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Surui 3 17% 0% 33% 0% 50% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Karitiana 6 33% 0% 17% 0% 33% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 17%
Mayan 20 8% 0% 43% 0% 50% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
Denisova 1 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 100% 0% 0% 0% 0% 0% 0%
Neanderthal* 1 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0% 50% 0% 0% 0% 0% 50% 0%
*rs11635884=C and rs6497284=C predicted















ND: not determined




















Edit: July 02, 2013:

I got some questions why some populations have let's say 20% Branch/haplotype #1 and #2 but not 20% of the population has light eye colors. The reasons is because haplotype 1 and 2 are recessive.
Thus, in order to get light eye colors not one but 2 copies/alleles are needed, one inherited from the father, one from the mother.
How to calculate frequency of light eyes in a population based on my presented tables (based on the Hardy-Weinberg principle):
Frequency of light eyes in a population = (%ht1 +%ht2)2

Example1: Germans have 46% ht1 and 33% ht2.
(46%+33%)2
= (0.46 + 0.33)2
= 0.792
= 0.62
= 62%
62% of the Germans have light eye color based on the HERC2 genotype.


Related:
The color of the eyes: 7 HERC2 variants in the Kurdish gene pool 
The color of the eyes: 7 HERC2 variants in the Eurasian gene pool 
The color of the eyes: at least 17 HERC2 variants in Human gene pool

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