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Tuesday, December 11, 2012

Kurdish mtDNA data VII

Today, I want to present data from Comas et al., 2000, Quintana-Murci et al., 2004, and Al-Zahery et al., 2012:

Only the HVR-1 region was sequenced in Comas et al., 2000 and Quintana-Murci et al., 2004, so the information is very limited. I tried to extract as much as possible. Al-Zahery et al., 2012 sequenced HVR-1 and HVR-2 region of mtDNA.

Comas et al., 2000 (N=29):
6x H
2x H with T16311C
1x H with T16311C, C16256T, T16352C (=H14a +T16311C )
1x H with C16218T (=H1ag1a or H1aq1 or H20)
1x H with A16309G, A16318T (=U7)
1x H with C16192R, C16261T (similar to: JN415470(Italy-LHON) Achilli Haplogroup H 19-AUG-2012
1x H with C16071T, G16145A, C16234 (=R2 +G16145A+C16234)
1x T with T16126C, C16294T, C16296T, C16256T, A16317G (=T2a1b2b +A16317G)
1x T with T16126C, C16067T, T16311C (=JT)
1x K with T16224C, T16311C
2x K with T16224C, T16311C, T16093C, C16260T (=K1a1+C16260T, or K1a17a+T16093C)
1x K with T16224C, T16311C, A16240G (=K+A16240G)
1x K with T16224C, T16311C, A16272G (=K+A16272G)
1x U1 with A16182C, A16183C, T16189C, T16249C (=U1a1)
1x U3 with A16343G (=U3)
1x U3 with A16343G, C16193T, T16249C (=U3c)
1x W with C16292T, C16192T, C16223T,  T16324C (=W6)
1x X with T16189C, C16278T, C16186T (=X+C16186T)
1x I with G16129A, C16223T
1x I with G16129A, C16223T, T16172C, T16189C, C16083T, C16355T (=I1a1d+C16083T, C16355T)
1x Other with C16223T, T16086C, G16153A, G16319A (=N2a+T16086C)
1x Other with C16223T, G16145A, C16176G (=N1b1)

Quintana-Murci et al., 2004 (N=20):
1x H CRS

1x H T16086C (=H15b; close to EU600353(Druze) Shlush)
1x HV* CRS
1x HV* 16174
1x HV1 C16067T, C16355T (=HV1a1)
1x HV2 C16168T, T16189C, T16217C, C16287T 
1x I G16129A, C16168T, T16172C, 16173, C16223T (=I1a)
1x J1 C16069T, T16126C, G16145A, C16222T, A16235G, C16261T, T16311C (=J1b1b2 or J1b3)
1x J1 C16069T, T16126C, G16145A, C16222T, C16261T C16278T, C16287T (=J1b4)
1x K 16093, T16224C, T16311C (=K1a)

1x K 16129, T16224C, T16311C (= K1a11 or K2b2)
1x U5 T16093C, T16189C, C16270T
1x U7 C16069T, A16227G, C16278T, A16318C, T16359C (very close to HM852853(Turk 187) Schoenberg)
1x U7 C16192T, A16309G, A16318T
1x U7 T16243C, A16309G, A16318T
1x U7 A16309G, A16318T
1x U8b A16066G, G16129A, C16169T, A16183C, T16189C, C16234T, T16311C (=U8b1a1)
1x U8b C16111T, T16172C, A16183C, T16189C, T16311C
1x W C16223T, C16292T, C16286T (=W4a)

1x W C16223T, C16292T


Al-Zahery et al., 2012 (N=15):

1x    H5    16051G    16255A    16304C    16319A    16327T    263G    315.1C    456T           
2x    J1b1b1    C16069T    T16126C    G16145A    C16261T    16519C    A73G    A263G    C295T    309.1C    315.1C    C462T    T489C    523DEL    524DEL   (very close to JF939049(Armenian))
1x    J1c2m (old J1c2a)  C16069T    T16126C    16148T    A73G    185A    228A    A263G    C295T    315.1C    C462T    T489C    523DEL    524DEL  (close to JQ797801 from Romania and  JQ797802 from West-Siberia (Khanty))         
1x    L3e5    16037G    A16041G    C16223T    A73G    C150T    A263G    315.1C    T398C    523DEL    524DEL                           
1x    M1a1    G16129A    16182C    16183C    T16189C    C16223T    T16249C    T16311C    T16359C    C16360T    T16519C    A73G    T195C    A263G    309.1C    309.2C    315.1C    T489C
1x    R0    16519C    16524C    263G    315.1C                                                   
1x    R0    16368C    16519C    263G    309.1C    315.1C                                               
1x    T1a7   T16126C    A16163G    C16186T    T16189C    G16274A    C16294T    T16519C    A73G    A263G    309.1C    315.1C    A512G  (close to EU935435(Egypt) Kujanova and JQ798027 (Israel))
1x    T1b    T16126C    A16163G    T16189C    T16243C    A16247G    C16294T    T16519C    A73G    152C    A263G    309.1C    315.1C    524.1A    524.2C           
1x    U1b    C16111T    16214A    T16249C    G16319A    C16327T    T16519C    A73G    T146C    T152C    A263G    C285T    315.1C    572T               
1x    U3c    C16193T    T16249C    A16343G    G16526A    A73G    C150T    A263G    315.1C  (close to HM852797(Azeri34) and HM852803(Azeri42) Schoenberg)               
1x    U4    T16356C    T16519C    A73G    T195C    A263G    309.1C    315.1C    G499A    524.1A    524.2C                         
1x    U7a    A16309G    A16318T    T16519C    A73G    C151T    T152C    A263G    309.1C    315.1C    523DEL    524DEL                       
1x    W3    G16153A    C16223T    C16292T    C16294T    T16519C    A73G    T152C    A189G    C194T    T195C    T199C    T204C    G207A    A263G    309.1C    315.1C   

 To summarize all Kurdish mtDNA (N=88):

1x B4b1a (Kurd from Turkey) 
1x C4b (Alevi Kurmanji)
1x G2a (Sorani)
1x H CRS (Kurds from Iran; Quintana-Murci et al., 2004)
6x H (Kurds from Georgia; Comas et al., 2000)
2x H with T16311C  (Kurds from Georgia; Comas et al., 2000)
1x H with C16218T (=H1ag1a or H1aq1 or H20) (Kurds from Georgia; Comas et al., 2000)
1x H with C16192R, C16261T (similar to: JN415470(Italy-LHON) Achilli Haplogroup H 19-AUG-2012 (Kurds from Georgia; Comas et al., 2000)
1x H5  16051G, 16255A, 16304C, 16319A, 16327T, 263G, 315.1C, 456T (Kurds from Iraq; Al-Zahery et al., 2012)  1x H5a1 (Sorani)
1x H13a2 (Alevi Kurmanji from Dersim)
1x H14 (Yezidi)
1x H14a with T16311C, C16256T, T16352C (=H14a +T16311C ) (Kurds from Georgia; Comas et al., 2000)
1x H15a1 (Sorani; mtDNA fully sequenced here and here)
1x H15b (Sorani)
1x H15b T16086C (close to EU600353(Druze) Shlush)(Kurds from Iran; Quintana-Murci et al., 2004)
1x HV* CRS (Kurds from Iran; Quintana-Murci et al., 2004)
1x HV* 16174 (Kurds from Iran; Quintana-Murci et al., 2004)
1x HV1a1 C16067T, C16355T (=HV1a1) (Kurds from Iran; Quintana-Murci et al., 2004)
1x HV2 C16168T, T16189C, T16217C, C16287T (Kurds from Iran; Quintana-Murci et al., 2004)
1x HV (Sorani)
1x HV (Kurmanji from Zakho)
1x I1a G16129A, C16168T, T16172C, 16173, C16223T (Kurds from Iran; Quintana-Murci et al., 2004)
1x I with G16129A, C16223T (Kurds from Georgia; Comas et al., 2000)
1x I1a1d with G16129A, C16223T, T16172C, T16189C, C16083T, C16355T (=I1a1d+C16083T, C16355T) (Kurds from Georgia; Comas et al., 2000)
1x I5a (Zaza from Dersim)
1x J1b C16069T, T16126C, G16145A, C16222T, A16235G, C16261T, T16311C (Kurds from Iran; Quintana-Murci et al., 2004)
1x J1b (Sorani)
2x J1b1b1 C16069T, T16126C, G16145A, C16261T, 16519C, A73G, A263G, C295T, 309.1C    315.1C, C462T, T489C, 523DEL, 524DEL   (very close to JF939049(Armenian)) (Kurds from Iraq; Al-Zahery et al., 2012)
1x J1b4 C16069T, T16126C, G16145A, C16222T, C16261T C16278T, C16287T (Kurds from Iran; Quintana-Murci et al., 2004)
1x J1c (Alevi Kurmanji from Dersim)
1x J1c2m (old J1c2a)  C16069T, T16126C, 16148T, A73G, 185A, 228A, A263G, C295T, 315.1C, C462T, T489C, 523DEL, 524DEL  (close to JQ797801 from Romania and  JQ797802 from West-Siberia (Khanty))(Kurds from Iraq; Al-Zahery et al., 2012)  
1x J1d (Feyli, originally from Iran)
1x J1d (Kurd from Iraq)
1x J2a1a  (Kurd from Turkey)
1x J2b1 (Kurd from Iraq/Iran)
1x JT with T16126C, C16067T, T16311C (=JT) (Kurds from Georgia; Comas et al., 2000)
1x K1a T16093C, T16224C, T16311C (Kurds from Iran; Quintana-Murci et al., 2004)
1x K 16129, T16224C, T16311C (= K1a11 or K2b2) (Kurds from Iran; Quintana-Murci et al., 2004)
1x K with T16224C, T16311C (Kurds from Georgia; Comas et al., 2000)
2x K with T16224C, T16311C, T16093C, C16260T (=K1a1+C16260T, or K1a17a+T16093C)(Kurds from Georgia; Comas et al., 2000)
1x K with T16224C, T16311C, A16240G (=K+A16240G) (Kurds from Georgia; Comas et al., 2000)
1x K with T16224C, T16311C, A16272G (=K+A16272G) (Kurds from Georgia; Comas et al., 2000)
1x L3e5 16037G, A16041G, C16223T, A73G, C150T, A263G, 315.1C, T398C, 523DEL, 524DEL
(Kurds from Iraq; Al-Zahery et al., 2012)
1x M1a1 G16129A, 16182C, 16183C, T16189C, C16223T, T16249C, T16311C, T16359C, C16360T, T16519C, A73G, T195C, A263G, 309.1C, 309.2C, 315.1C, T489C (Kurds from Iraq; Al-Zahery et al., 2012)
1x N1b1 (Alevi Kurmanji from Dersim)
1x N1b1 with C16223T, G16145A, C16176G (=N1b1) (Kurds from Georgia; Comas et al., 2000)
1x N2a with C16223T, T16086C, G16153A, G16319A (=N2a+T16086C) (Kurds from Georgia; Comas et al., 2000)
1x R0 16519C, 16524C, A263G, 315.1C (Kurds from Iraq; Al-Zahery et al., 2012)                               1x R0 16368C, 16519C, A263G, 309.1C, 315.1C (Kurds from Iraq; Al-Zahery et al., 2012)   
1x R2 with C16071T, G16145A, C16234 (=R2 +G16145A+C16234) (Kurds from Georgia; Comas et al., 2000)
1x T1 (Feyli)
1x T1a7 T16126C, A16163G, C16186T, T16189C, G16274A, C16294T, T16519C, A73G, A263G, 309.1C, 315.1C, A512G  (close to EU935435(Egypt) Kujanova and JQ798027 (Israel))(Kurds from Iraq; Al-Zahery et al., 2012)
1x T2a1b2b with T16126C, C16294T, C16296T, C16256T, A16317G (=T2a1b2b +A16317G) (Kurds from Georgia; Comas et al., 2000)
1x T1b T16126C, A16163G, T16189C, T16243C, A16247G, C16294T, T16519C, A73G, 152C, A263G, 309.1C, 315.1C, 524.1A, 524.2C (Kurds from Iraq; Al-Zahery et al., 2012)
1x T2b (Kurd from Turkey)
1x U1a1 (Zaza)
1x U1a1 (Sorani)
1x U1a1 with A16182C, A16183C, T16189C, T16249C (=U1a1) (Kurds from Georgia; Comas et al., 2000)
1x U1b C16111T, 16214A, T16249C, G16319A, C16327T, T16519C, A73G, T146C, T152C, A263G, C285T, 315.1C, 572T (Kurds from Iraq; Al-Zahery et al., 2012)
1x U3 with A16343G (=U3) (Kurds from Georgia; Comas et al., 2000)
1x U3c with A16343G, C16193T, T16249C (=U3c) (Kurds from Georgia; Comas et al., 2000)
1x U3c C16193T, T16249C, A16343G, G16526A, A73G, C150T, A263G, 315.1C  (close to HM852797(Azeri34) and HM852803(Azeri42) Schoenberg)(Kurds from Iraq; Al-Zahery et al., 2012)   
1x U4 T16356C, T16519C, A73G, T195C, A263G, 309.1C, 315.1C, G499A, 524.1A, 524.2C
(Kurds from Iraq; Al-Zahery et al., 2012)
1x U5 T16093C, T16189C, C16270T (Kurds from Iran; Quintana-Murci et al., 2004)
1x U5a1 (Kurmanji from Dohuk)
1x U7 C16069T, A16227G, C16278T, A16318C, T16359C (very close to HM852853(Turk 187) Schoenberg) (Kurds from Iran; Quintana-Murci et al., 2004)
1x U7 C16192T, A16309G, A16318T (Kurds from Iran; Quintana-Murci et al., 2004)
1x U7 T16243C, A16309G, A16318T (Kurds from Iran; Quintana-Murci et al., 2004)
1x U7 A16309G, A16318T (Kurds from Iran; Quintana-Murci et al., 2004)
1x U7a A16309G, A16318T, T16519C, A73G, C151T, T152C, A263G, 309.1C, 315.1C, 523DEL, 524DEL (Kurds from Iraq; Al-Zahery et al., 2012)
1x U8b1a1 A16066G, G16129A, C16169T, A16183C, T16189C, C16234T, T16311C (Kurds from Iran; Quintana-Murci et al., 2004)
1x U8b C16111T, T16172C, A16183C, T16189C, T16311C (Kurds from Iran; Quintana-Murci et al., 2004)
1x U8b (Feyli)
1x W C16223T, C16292T (Kurds from Iran; Quintana-Murci et al., 2004)
1x W3 G16153A, C16223T, C16292T, C16294T, T16519C, A73G, T152C, A189G, C194T, T195C, T199C, T204C, G207A, A263G, 309.1C, 315.1C (Kurds from Iraq; Al-Zahery et al., 2012)
1x W4a C16223T, C16292T, C16286T (Kurds from Iran; Quintana-Murci et al., 2004)
1x W6 with C16292T, C16192T, C16223T,  T16324C (=W6) (Kurds from Georgia; Comas et al., 2000)
1x X with T16189C, C16278T, C16186T (=X+C16186T) (Kurds from Georgia; Comas et al., 2000)


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