Saturday, February 15, 2014

Autosomal DNA from Iraq

Even today, Iraq is a blind spot in terms of genetic studies despite its old and rich history. In order to partly fill this gap I want to present autosomal DNA data from Iraqi individuals using Dodecad K12b.

2 Assyrians
2 Mandaeans
10 Jews
1 Arab from South Iraq
2 Arabs from Baghdad
1 Yezidi Kurd
2 Kurmanji Kurd
9 Sorani Kurds
3 Feyli Kurds

The three most obvious observations: 
1. The South Iraqi is an outlier in the data set suggesting very recent migration into Iraq. The South Iraqi individual clusters with Bedouins. More than 10% of his ancestry is African.
2. Kurds have more of the Northern European component (5-8%), however, the Arab Baghdadi2 and Assyrian2 also shows some of it (~2%) suggesting some admixture with Kurds or other Iranians.
3. The South Asian component can be found in Arabs (2.9%±1.5%) and Kurds (3.1%±1.5%) but is rare in other Iraqi minorities.

Note: Blogger Mfa from corduene.blogspot.com helped me setting up the interactive chart below.



Edit 03/03/2014:

The K12b values of Saudis and Bedouins (from Dodecad K12b):

Saturday, February 8, 2014

Kurdish mtDNA data XI

Just an update (N=186):




 
1x B4b1a (Kurd from Turkey) 
1x C (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x C4b (=C4b+A248G, A14566G, T16519C, A249A (not deleted)) (Alevi Kurmanji)
2x D (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x D4 T16090C/T, T16223C, T16362C, A73G, A263G, 309.1C, 315.1C (Kurds from Iran; Derenko et al., 2007)
2x D4 T16223C, T16362C, A73G, A263G, 309.1C, 315.1C (Kurds from Iran; Derenko et al., 2007
1x G2a (=G2a+T16172C) (Sorani)
8x H (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x H CRS (Kurds from Iran; Quintana-Murci et al., 2004)
6x H (Kurds from Georgia; Comas et al., 2000)
2x H with T16311C  (Kurds from Georgia; Comas et al., 2000)
1x H T16209C, 44.1C, T57C, A93G, A263G, 309.1C, 309.2C, 315.1C (Kurds from Iran; Derenko et al., 2007)
1x H
G16129A, C16248T, T195C, A263G, 315.1C (Kurds from Iran; Derenko et al., 2007)
1x H
CRS, A263G, 315.1C (Kurds from Iran; Derenko et al., 2007) 
1x H with C16218T (=H1ag1a or H1aq1 or H20) (Kurds from Georgia; Comas et al., 2000)
1x H with C16192R, C16261T (similar to: JN415470(Italy-LHON) Achilli Haplogroup H 19-AUG-2012 (Kurds from Georgia; Comas et al., 2000)
1x H5'36 (Kurd from Turkey)
1x H5  16051G, 16255A, 16304C, 16319A, 16327T, 263G, 315.1C, 456T (Kurds from Iraq; Al-Zahery et al., 2012)   
1x H5a1 (H5a1+T16304G, A3397G, G5471A) (G5471A usually in H5b) (Sorani)
1x H13a2b2 (Alevi Kurmanji from Dersim)
1x H13c1 (H13c1+T3398C, T10463C, T15394C) (Alevi Kurmanji from Sivas and Erzincan)
1x H14a with T16311C, C16256T, T16352C (=H14a +T16311C ) (Kurds from Georgia; Comas et al., 2000)
1x H14b T3197C (=H14b+C4086T, A16265T) (Yezidi) 
1x H15a1 (=H15a1+309.1C, 309.2C, 315.1C, A15316G) (Sorani; mtDNA fully sequenced here and here)
1x H15b (Sorani)
1x H15b T16086C (close to EU600353(Druze) Shlush)(Kurds from Iran; Quintana-Murci et al., 2004)
1x H20 (3/4 Zaza from Bingol, 1/4 (paternal grandmother) Kurmanji from Bitlis)
5x HV (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x HV* CRS (Kurds from Iran; Quintana-Murci et al., 2004)
1x HV* C16174T (Kurds from Iran; Quintana-Murci et al., 2004)
1x HV C16174T, C41T, A214G, A263G, 309.1C, 309.2C, 315.1C (Kurds from Iran; Derenko et al., 2007)
1x HV A73G, T391C, G16153A (Kurmanji from Zakho)
1x HV1 (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x HV1a1 C16067T, C16355T, C150T, A263G, 315.1C (Kurds from Iran; Derenko et al., 2007)
1x HV1a1 C16067T, C16355T (=HV1a1) (Kurds from Iran; Quintana-Murci et al., 2004)
1x HV1b2 (HV1b2+T3398C G13368A, T16519C)(Yezidi Kurd from Georgia)
1x HV2 C16168T, T16189C, T16217C, C16287T (Kurds from Iran; Quintana-Murci et al., 2004)
1x HV2a1 (T246C, C16214T, A16335G (=HV2a1) additional G13708A (Kurmanji Sunni from Sirnak/Hasankeyf/Nisebin/Mardin/Kamishli)
1x HV14 (T480C, G4655A, T15115C =HV14) (Kurmanji from Diyarbakir (Amed)/Turkey)
1x HV14 T16311C, G4655A, T15115C (Sorani)
1x I (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x I with G16129A, C16223T (Kurds from Georgia; Comas et al., 2000)
 1x I1a G16129A, C16168T, T16172C, 16173, C16223T (Kurds from Iran; Quintana-Murci et al., 2004)
1x I1a1d with G16129A, C16223T, T16172C, T16189C, C16083T, C16355T (=I1a1d+C16083T, C16355T) (Kurds from Georgia; Comas et al., 2000)
1x I5a pre-I5a3  because G5231A, A15052G = I5a3 but still C150C, T6278T = I5a; additional   C16301T (Zaza from Dersim)
1x I5a (Zaza from Baltas/Varto, Turkey)
1x J* (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
2x J1b (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x J1b C16069T, T16126C, G16145A, C16222T, A16235G, C16261T, T16311C (Kurds from Iran; Quintana-Murci et al., 2004)
1x J1b1b1 T10410A, C16069T, T16126C, G16145A, C16261T, C16290T, A73G, A263G, C271T, C295T, 309.1C, 315.1C (Kurds from Iran; Derenko et al., 2007)
2x J1b1b1 T10410A, C16069T, T16126C, G16145A, C16261T, A73G, A263G, C295T, 309.1C, 315.1C (Kurds from Iran; Derenko et al., 2007)
2x J1b1b1 C16069T, T16126C, G16145A, C16261T, T16519C, A73G, A263G, C295T, 309.1C    315.1C, C462T, T489C, 523DEL, 524DEL   (very close to JF939049(Armenian)) (Kurds from Iraq; Al-Zahery et al., 2012)
3x J1b2 (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x J1b3 T1822C, A8460G, T16311C  (=J1b3+T1822C+T16311C) (Sorani)
1x J1b3b A73G, A263G, C295T, T489C, A750G, A1438G, A2706G, G3010A, T4216C, A4769G, C7028T, G8269A, A8460G, A8860G, A10398G, A11251G, G11719A, A12612G, G13708A, C14766T, A15326G, C15452A, T15530C, C16069T, T16126C, G16145A, C16222T, A16235G, C16261T (1/2 Alevi Kurmanji paternally, 1/2 Sunni Kurmanji maternally from Bingol, Kighi, Turkey)
1x J1b4 C16069T, T16126C, G16145A, C16222T, C16261T C16278T, C16287T (Kurds from Iran; Quintana-Murci et al., 2004)
1x J1c (=J1c+G185T, 4812A, C16290T, T16519C) (Alevi Kurmanji from Dersim)
1x J1c2m (old J1c2a)  C16069T, T16126C, 16148T, A73G, 185A, 228A, A263G, C295T, 315.1C, C462T, T489C, 523DEL, 524DEL  (close to JQ797801 from Romania and  JQ797802 from West-Siberia (Khanty))(Kurds from Iraq; Al-Zahery et al., 2012)  
1x J1d (=J1d+A15218G, T16519C) (Feyli, originally from Iran)
1x J1d (Kurd from Iraq)
1x J1d3b (=J1d3b+10742G, T11353C, 12425G, T16519C (Kurmanji from Adıyaman and Gaziantep; now living in Konya area)
1x J2a1a1 C16069T, T16126C, G16145A, A16182C, A16183C, T16189C, 16193.1C, T16231C, C16261T, A73G, C150T, C152T, T195C, C198T, A215G, C295T, 315.1C, T319C (Kurds from Iran; Derenko et al., 2007
1x J2a1a1 (=J2a1a1+A10044G, G11914A, C16264T)  (Kurd from Turkey)
3x J2b (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x J2b1 (Kurd from Iraq/Iran)
1x J2d C16069T, T16126C, C16193T, A73G, C152T, A263G, C295T, 315.1C (Kurds from Iran; Derenko et al., 2007)
1x JT with T16126C, C16067T, T16311C (=JT) (Kurds from Georgia; Comas et al., 2000)
1x K (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x K1a9 (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x K1a T16093C, T16224C, T16311C (Kurds from Iran; Quintana-Murci et al., 2004)
1x K 16129, T16224C, T16311C (= K1a11 or K2b2) (Kurds from Iran; Quintana-Murci et al., 2004)
1x K with T16224C, T16311C (Kurds from Georgia; Comas et al., 2000)
2x K with T16224C, T16311C, T16093C, C16260T (=K1a1+C16260T, or K1a17a+T16093C)(Kurds from Georgia; Comas et al., 2000)
1x K with T16224C, T16311C, A16240G (=K+A16240G) (Kurds from Georgia; Comas et al., 2000)
1x K with T16224C, T16311C, A16272G (=K+A16272G) (Kurds from Georgia; Comas et al., 2000)
1x L3e5 16037G, A16041G, C16223T, A73G, C150T, A263G, 315.1C, T398C, 523DEL, 524DEL
(Kurds from Iraq; Al-Zahery et al., 2012)
1x M/C (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x M1a1 G16129A, 16182C, 16183C, T16189C, C16223T, T16249C, T16311C, T16359C, C16360T, T16519C, A73G, T195C, A263G, 309.1C, 309.2C, 315.1C, T489C (Kurds from Iraq; Al-Zahery et al., 2012)
5x N (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x N1b (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x N1b1 (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x N1b1 (=N1b1+C16176C, C1703A, C3921A, G7337A, T16519C) (Alevi Kurmanji from Dersim)
1x N1b1 with C16223T, G16145A, C16176G (=N1b1) (Kurds from Georgia; Comas et al., 2000)
1x N2a with C16223T, T16086C, G16153A, G16319A (=N2a+T16086C) (Kurds from Georgia; Comas et al., 2000)
1x R (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
2x R0 (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x R0 16519C, 16524C, A263G, 315.1C (Kurds from Iraq; Al-Zahery et al., 2012)
1x R0 16368C, 16519C, A263G, 309.1C, 315.1C (Kurds from Iraq; Al-Zahery et al., 2012)   
1x R2 with C16071T, G16145A, C16234 (=R2 +G16145A+C16234) (Kurds from Georgia; Comas et al., 2000)
1x T* T16126C, T16189C, 16193.1C, T16249C, C16294T, T16304C, A73G, T146C, T195C, A263G, 309.1C, 315.1C (Kurds from Iran; Derenko et al., 2007)
1x T1a1'3 T16126C, A16163G, C16186T, T16189C, C16294T, A73G, T152C, T195C, A263G, 315.1C (Kurds from Iran; Derenko et al., 2007)
4x T1 (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x T1 (=T1a2b+C12633T, G5460A, G11914A, T16311C, (T16519C))(Feyli)
1x T1 (Alevi Kurmanji from Dersim/Turkey)
1x T1a7 T16126C, A16163G, C16186T, T16189C, G16274A, C16294T, T16519C, A73G, A263G, 309.1C, 315.1C, A512G  (close to EU935435(Egypt) Kujanova and JQ798027 (Israel))(Kurds from Iraq; Al-Zahery et al., 2012)
1x T1b T16126C, A16163G, T16189C, T16243C, C16294T, A73G, A263G, 309.1C, 315.1C (Kurds from Iran; Derenko et al., 2007) 
1x T1b T16126C, A16163G, T16189C, T16243C, A16247G, C16294T, T16519C, A73G, 152C, A263G, 309.1C, 315.1C, 524.1A, 524.2C (Kurds from Iraq; Al-Zahery et al., 2012)
3x T2 (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x T2a1b2b with T16126C, C16294T, C16296T, C16256T, A16317G (=T2a1b2b +A16317G) (Kurds from Georgia; Comas et al., 2000)
1x T2b (Kurd from Turkey)
1x U1a'c  A16182C, A16183C, T16189C, T16249C, A73G, T146C, A263G, C285T, 309.1C (similar to HM852844(Iranian 9) Schoenberg) (Kurds from Iran; Derenko et al., 2007)
1x U1a'c with A16182C, A16183C, T16189C, T16249C (=U1a'c) (Kurds from Georgia; Comas et al., 2000)
1x U1a (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x U1a1 A14070A, T16163C (Zaza)
1x U1a1 G16129A, A16183C, T16189C, 16193.1C, T16224C, T16249C, T16288C, C16295T, A73G, C150T, T195C, A263G, C285T, 309.1C, 309.2C, 315.1C, A385G (Kurds from Iran; Derenko et al., 2007)
1x U1a1 A16183-, 16193.1C, C16193T.2C, T16249C, T72C, A73G, T195C, A263G, C285T, 309.1C, 315.1C, A385G (Kurds from Iran; Derenko et al., 2007)
1x U1a1a (Sorani) with A11467G,  A12308G,  G12372A, C285T,  T12879C,  A13104G, A14070G, G15148A, A15954C, T16249C, C2218T, G14364A, T16189C, G4991A, G6026A, T7581C, A385G, 3158.1T, G3591A, A13422G, G9575A, C2836T, G4659A, 573.1C, 573.2C, A10283G, (309.1C), (315.1C), (523-), (524-), (16182C), (16183C), (16519C) (=U1a1a; shares C2836T, G4659A mutation with Indian samples HM156682(India) Govindaraj) (fully sequenced here and here)
1x U1b C16111T, 16214A, T16249C, G16319A, C16327T, T16519C, A73G, T146C, T152C, A263G, C285T, 315.1C, 572T (Kurds from Iraq; Al-Zahery et al., 2012)
1x U2 (Alevi with Zaza ancestry)
1x U2e1a with A16051G, T152C, A508G, A3720G, A5390G, T5426C, C6045T, T6152C, A10876, T13020C, T13734C, A15907G, G16129C, T16362C, C340T, C11197T, T11732C, G7337A, A15218G, T16311C, T16519C (Sorani from Sulaymaniyah/Iraq)
1x U3 with A16343G (=U3) (Kurds from Georgia; Comas et al., 2000)
1x U3a (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x U3a with C150T, A14139G,  T15454C, A2294G,  T4703C,  G9266A, T6518A (flip!),  A10506G,  C13934T,  G16390A C2766A, 10790C, G16129A, 16257T, T16519C (Sorani from Sulaymaniyah/Iraq); (similar to HM852895(Georgian45) Schoenberg also with C2766A)
1x U3b with (U3b+G3591A, C15946T, A16203G, T16311C, T16356C, C4640T (flip!) (Kurmanji Sunni from Hakkari/Mardin) 
1x U3c with A16343G, C16193T, T16249C (=U3c) (Kurds from Georgia; Comas et al., 2000)
1x U3c C16193T, T16249C, A16343G, G16526A, A73G, C150T, A263G, 315.1C  (close to HM852797(Azeri34) and HM852803(Azeri42) Schoenberg)(Kurds from Iraq; Al-Zahery et al., 2012)   
1x U4 T16356C, T16519C, A73G, T195C, A263G, 309.1C, 315.1C, G499A, 524.1A, 524.2C
(Kurds from Iraq; Al-Zahery et al., 2012)
1x U5 T16093C, T16189C, C16270T (Kurds from Iran; Quintana-Murci et al., 2004)
1x U5a1 (Kurmanji from Dohuk)
1x U5a1a (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x U5a1a1 (maternally Kurdish from Ardalan)
4x U7 (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x U7 (Zaza from Turkey)
1x U7 C16069T, A16227G, C16278T, A16318C, T16359C (very close to HM852853(Turk 187) Schoenberg) (Kurds from Iran; Quintana-Murci et al., 2004)
1x U7 C16192T, A16309G, A16318T (Kurds from Iran; Quintana-Murci et al., 2004)
1x U7 T16243C, A16309G, A16318T (Kurds from Iran; Quintana-Murci et al., 2004)
1x U7 A16309G, A16318T (Kurds from Iran; Quintana-Murci et al., 2004)
1x U7 A16309G, A16318T (Kurds from Georgia; Comas et al., 2000)
1x U7a A16309G, A16318T, T16519C, A73G, C151T, T152C, A263G, 309.1C, 315.1C, 523DEL, 524DEL (Kurds from Iraq; Al-Zahery et al., 2012)
1x U7a4 T16126C, C16148T, A16309G, A16318T, A73G, T146C, C150T, C152T, T195C, A263G, 315.1C (Kurds from Iran; Derenko et al., 2007)
1x U7a4 T16126C, C16148T, A16318C, A73G, T146C, C151T, C152T, T195C, A263G, 315.1C (Kurds from Iran; Derenko et al., 2007)
1x U7a4 T16126C, C16148T, A16318T, A73G, T146C, C151T, C152T, T195C, A263G, 309.1C, 315.1C (Kurds from Iran; Derenko et al., 2007)
1x U7a'5 G16129A, A16318T, A73G, C151T, C152T, A263G, 309.1C, 315.1C (Kurds from Iran; Derenko et al., 2007)
1x U8b1a1 A16066G, G16129A, A16183C, T16189C, C16234T, A73G, G94A, T195C, A263G, 309.1C, 309.2C, 315.1C (Kurds from Iran; Derenko et al., 2007)
1x U8b1a1 A16066G, G16129A, C16169T, A16183C, T16189C, C16234T, T16311C (Kurds from Iran; Quintana-Murci et al., 2004)
1x U8b C16111T, T16172C, A16183C, T16189C, T16311C (Kurds from Iran; Quintana-Murci et al., 2004)
1x U8b (Feyli)
1x U8b (Zaza from Sivas, originally from Dersim)
1x W (Kurds from Saqqez, Kurdistan-Iran; Farjadian et al., 2011)
1x W C16223T, C16292T (Kurds from Iran; Quintana-Murci et al., 2004)
1x W3 G16153A, C16223T, C16292T, C16294T, T16519C, A73G, T152C, A189G, C194T, T195C, T199C, T204C, G207A, A263G, 309.1C, 315.1C (Kurds from Iraq; Al-Zahery et al., 2012)
1x W4a C16223T, C16292T, C16286T (Kurds from Iran; Quintana-Murci et al., 2004)
1x W6 with C16292T, C16192T, C16223T,  T16324C (=W6) (Kurds from Georgia; Comas et al., 2000)
1x W6c with A73G, A189G, C194T, T195C, T204C, G207A, A263G, 309.1C, 315.1C, C16211T, C16223T, C16292T, T16325C, T16519C (N91920     Kurdish Gule, ≈1850, Ahlat/Kurdistan-Turkey)
1x X with T16189C, C16278T, C16186T (=X+C16186T) (Kurds from Georgia; Comas et al., 2000)
1x X2e T16124C, A16182C, A16183C, T16189C, 16193.1C, T16223C, C16278T, T16325C, A73G, A153G, T195C, A263G, 308.1A, 309.1C, 315.1C, C338T (Kurds from Iran; Derenko et al., 2007)

Related post:
mtDNA of Kurds Part I
mtDNA of Kurds Part II
mtDNA of Kurds Part III
mtDNA of Kurds Part IV
mtDNA of Kurds V
Kurdish mtDNA data VI 
Kurdish mtDNA data VII
Kurdish mtDNA data VIII 
Kurdish mtDNA data IX
Kurdish mtDNA data X